Title: | Read and Write 'Parquet' Files |
---|---|
Description: | Self-sufficient reader and writer for flat 'Parquet' files. Can read most 'Parquet' data types. Can write many 'R' data types, including factors and temporal types. See docs for limitations. |
Authors: | Gábor Csárdi [aut, cre], Hannes Mühleisen [aut, cph] , Google Inc. [cph], Apache Software Foundation [cph], Posit Software, PBC [cph], RAD Game Tools [cph], Valve Software [cph], Tenacious Software LLC [cph], Facebook, Inc. [cph] |
Maintainer: | Gábor Csárdi <[email protected]> |
License: | MIT + file LICENSE |
Version: | 0.3.1.9000 |
Built: | 2024-11-21 05:35:54 UTC |
Source: | https://github.com/r-lib/nanoparquet |
Self-sufficient reader and writer for flat 'Parquet' files. Can read most 'Parquet' data types. Can write many 'R' data types, including factors and temporal types. See docs for limitations.
nanoparquet
is a reader and writer for a common subset of Parquet files.
Read and write flat (i.e. non-nested) Parquet files.
Can read most Parquet data types.
Can write many R data types, including factors and temporal types to Parquet.
Completely dependency free.
Supports Snappy, Gzip and Zstd compression.
Nested Parquet types are not supported.
Some Parquet logical types are not supported: INTERVAL
,
UNKNOWN
.
Only Snappy, Gzip and Zstd compression is supported.
Encryption is not supported.
Reading files from URLs is not supported.
Being single-threaded and not fully optimized, nanoparquet is probably not suited well for large data sets. It should be fine for a couple of gigabytes. Reading or writing a ~250MB file that has 32 million rows and 14 columns takes about 10-15 seconds on an M2 MacBook Pro. For larger files, use Apache Arrow or DuckDB.
Install the R package from CRAN:
install.packages("nanoparquet")
Call read_parquet()
to read a Parquet file:
df <- nanoparquet::read_parquet("example.parquet")
To see the columns of a Parquet file and how their types are mapped to
R types by read_parquet()
, call read_parquet_schema()
first:
nanoparquet::read_parquet_schema("example.parquet")
Folders of similar-structured Parquet files (e.g. produced by Spark) can be read like this:
df <- data.table::rbindlist(lapply( Sys.glob("some-folder/part-*.parquet"), nanoparquet::read_parquet ))
Call write_parquet()
to write a data frame to a Parquet file:
nanoparquet::write_parquet(mtcars, "mtcars.parquet")
To see how the columns of the data frame will be mapped to Parquet types
by write_parquet()
, call infer_parquet_schema()
first:
nanoparquet::infer_parquet_schema(mtcars)
Call read_parquet_info()
, read_parquet_schema()
, or
read_parquet_metadata()
to see various kinds of metadata from a Parquet
file:
read_parquet_info()
shows a basic summary of the file.
read_parquet_schema()
shows all columns, including non-leaf columns,
and how they are mapped to R types by read_parquet()
.
read_parquet_metadata()
shows the most complete metadata information:
file meta data, the schema, the row groups and column chunks of the
file.
nanoparquet::read_parquet_info("mtcars.parquet") nanoparquet::read_parquet_schema("mtcars.parquet") nanoparquet::read_parquet_metadata("mtcars.parquet")
If you find a file that should be supported but isn't, please open an issue here with a link to the file.
See also ?parquet_options()
.
nanoparquet.class
: extra class to add to data frames returned by
read_parquet()
. If it is not defined, the default is "tbl"
,
which changes how the data frame is printed if the pillar package is
loaded.
nanoparquet.use_arrow_metadata
: unless this is set to FALSE
,
read_parquet()
will make use of Arrow metadata in the Parquet file.
Currently this is used to detect factor columns.
nanoparquet.write_arrow_metadata
: unless this is set to FALSE
,
write_parquet()
will add Arrow metadata to the Parquet file.
This helps preserving classes of columns, e.g. factors will be read
back as factors, both by nanoparquet and Arrow.
MIT
Maintainer: Gábor Csárdi [email protected]
Authors:
Hannes Mühleisen (ORCID) [copyright holder]
Other contributors:
Google Inc. [copyright holder]
Apache Software Foundation [copyright holder]
Posit Software, PBC [copyright holder]
RAD Game Tools [copyright holder]
Valve Software [copyright holder]
Tenacious Software LLC [copyright holder]
Facebook, Inc. [copyright holder]
Useful links:
Report bugs at https://github.com/r-lib/nanoparquet/issues
Infer Parquet schema of a data frame
infer_parquet_schema(df, options = parquet_options())
infer_parquet_schema(df, options = parquet_options())
df |
Data frame. |
options |
Return value of |
Data frame, the inferred schema. It has the same columns as
the return value of read_parquet_schema()
:
file_name
, name
, r_type
, type
, type_length
, repetition_type
, converted_type
, logical_type
, num_children
, scale
, precision
, field_id
.
read_parquet_schema()
to read the schema of a Parquet file,
parquet_schema()
to create a Parquet schema from scratch.
How nanoparquet maps R types to Parquet types.
When writing out a data frame, nanoparquet maps R's data types to Parquet logical types. The following table is a summary of the mapping. For the details see below.
R type | Parquet type | Default | Notes |
character | STRING (BYTE_ARRAY) | x | I.e. STRSXP. Converted to UTF-8. |
" | BYTE_ARRAY | ||
" | FIXED_LEN_BYTE_ARRAY | ||
" | ENUM | ||
" | UUID | ||
Date | DATE | x | |
difftime | INT64 | x | If not hms::hms. Arrow metadata marks it as Duration(NS). |
factor | STRING | x | Arrow metadata marks it as a factor. |
" | ENUM | ||
hms::hms | TIME(true, MILLIS) | x | Sub-milliseconds precision is lost. |
integer | INT(32, true) | x | I.e. INTSXP. |
" | INT64 | ||
" | INT96 | ||
" | DECIMAL (INT32) | ||
" | DECIMAL (INT64) | ||
" | INT(8, *) | ||
" | INT(16, *) | ||
" | INT(32, signed) | ||
list | BYTE_ARRAY | Must be a list of raw vectors. Messing values are NULL . |
|
" | FIXED_LEN_BYTE_ARRAY | Must be a list of raw vectors of the same length. Missing values are NULL . |
|
logical | BOOLEAN | x | I.e. LGLSXP. |
numeric | DOUBLE | x | I.e. REALSXP. |
" | INT96 | ||
" | FLOAT | ||
" | DECIMAL (INT32) | ||
" | DECIMAL (INT64) | ||
" | INT(*, *) | ||
" | FLOAT16 | ||
POSIXct | TIMESTAMP(true, MICROS) | x | Sub-microsecond precision is lost. |
The non-default mappings can be selected via the schema
argument. E.g.
to write out a factor column called 'name' as ENUM
, use
write_parquet(..., schema = parquet_schema(name = "ENUM"))
The detailed mapping rules are listed below, in order of preference. These rules will likely change until nanoparquet reaches version 1.0.0.
Factors (i.e. vectors that inherit the factor class) are converted
to character vectors using as.character()
, then written as a
STRSXP
(character vector) type. The fact that a column is a factor
is stored in the Arrow metadata (see below), unless the
nanoparquet.write_arrow_metadata
option is set to FALSE
.
Dates (i.e. the Date
class) is written as DATE
logical type, which
is an INT32
type internally.
hms
objects (from the hms package) are written as TIME(true, MILLIS)
.
logical type, which is internally the INT32
Parquet type.
Sub-milliseconds precision is lost.
POSIXct
objects are written as TIMESTAMP(true, MICROS)
logical type,
which is internally the INT64
Parquet type.
Sub-microsecond precision is lost.
difftime
objects (that are not hms
objects, see above), are
written as an INT64
Parquet type, and noting in the Arrow metadata
(see below) that this column has type Duration
with NANOSECONDS
unit.
Integer vectors (INTSXP
) are written as INT(32, true)
logical type,
which corresponds to the INT32
type.
Real vectors (REALSXP
) are written as the DOUBLE
type.
Character vectors (STRSXP
) are written as the STRING
logical type,
which has the BYTE_ARRAY
type. They are always converted to UTF-8
before writing.
Logical vectors (LGLSXP
) are written as the BOOLEAN
type.
Other vectors error currently.
You can use infer_parquet_schema()
on a data frame to map R data types
to Parquet data types.
To change the default R to Parquet mapping, use parquet_schema()
and
the schema
argument of write_parquet()
. Currently supported
non-default mappings are:
integer
to INT64
,
integer
to INT96
,
double
to INT96
,
double
to FLOAT
,
character
to BYTE_ARRAY
,
character
to FIXED_LEN_BYTE_ARRAY
,
character
to ENUM
,
factor
to ENUM
,
integer
to DECIAML
& INT32
,
integer
to DECIAML
& INT64
,
double
to DECIAML
& INT32
,
double
to DECIAML
& INT64
,
integer
to INT(8, *)
, INT(16, *)
, INT(32, signed)
,
double
to INT(*, *)
,
character
to UUID
,
double
to FLOAT16
,
list
of raw
vectors to BYTE_ARRAY
,
list
of raw
vectors to FIXED_LEN_BYTE_ARRAY
.
When reading a Parquet file nanoparquet also relies on logical types and the Arrow metadata (if present, see below) in addition to the low level data types. The following table summarizes the mappings. See more details below.
Parquet type | R type | Notes |
Logical types | ||
BSON | character | |
DATE | Date | |
DECIMAL | numeric | REALSXP, potentially losing precision. |
ENUM | character | |
FLOAT16 | numeric | REALSXP |
INT(8, *) | integer | |
INT(16, *) | integer | |
INT(32, *) | integer | Large unsigned values may overflow! |
INT(64, *) | numeric | REALSXP |
INTERVAL | list(raw) | Missing values are NULL . |
JSON | character | |
LIST | Not supported. | |
MAP | Not supported. | |
STRING | factor | If Arrow metadata says it is a factor. Also UTF8. |
" | character | Otherwise. Also UTF8. |
TIME | hms::hms | Also TIME_MILLIS and TIME_MICROS. |
TIMESTAMP | POSIXct | Also TIMESTAMP_MILLIS and TIMESTAMP_MICROS. |
UUID | character | In 00112233-4455-6677-8899-aabbccddeeff form. |
UNKNOWN | Not supported. | |
Primitive types | ||
BOOLEAN | logical | |
BYTE_ARRAY | factor | If Arrow metadata says it is a factor. |
" | list(raw) | Otherwise. Missing values are NULL . |
DOUBLE | numeric | REALSXP |
FIXED_LEN_BYTE_ARRAY | list(raw) | Missing values are NULL . |
FLOAT | numeric | REALSXP |
INT32 | integer | |
INT64 | numeric | REALSXP |
INT96 | POSIXct | |
The exact rules are below. These rules will likely change until nanoparquet reaches version 1.0.0.
The BOOLEAN
type is read as a logical vector (LGLSXP
).
The STRING
logical type and the UTF8
converted type is read as
a character vector with UTF-8 encoding.
The DATE
logical type and the DATE
converted type are read as a
Date
R object.
The TIME
logical type and the TIME_MILLIS
and TIME_MICROS
converted types are read as an hms
object, see the hms package.
The TIMESTAMP
logical type and the TIMESTAMP_MILLIS
and
TIMESTAMP_MICROS
converted types are read as POSIXct
objects.
If the logical type has the UTC
flag set, then the time zone of the
POSIXct
object is set to UTC
.
INT32
is read as an integer vector (INTSXP
).
INT64
, DOUBLE
and FLOAT
are read as real vectors (REALSXP
).
INT96
is read as a POSIXct
read vector with the tzone
attribute
set to "UTC"
. It was an old convention to store time stamps as
INT96
objects.
The DECIMAL
converted type (FIXED_LEN_BYTE_ARRAY
or BYTE_ARRAY
type) is read as a real vector (REALSXP
), potentially losing
precision.
The ENUM
logical type is read as a character vector.
The UUID
logical type is read as a character vector that uses the
00112233-4455-6677-8899-aabbccddeeff
form.
The FLOAT16
logical type is read as a real vector (REALSXP
).
BYTE_ARRAY
is read as a factor object if the file was written
by Arrow and the original data type of the column was a factor.
(See 'The Arrow metadata below.)
Otherwise BYTE_ARRAY
is read a list of raw vectors, with missing
values denoted by NULL
.
Other logical and converted types are read as their annotated low level types:
INT(8, true)
, INT(16, true)
and INT(32, true)
are read as
integer vectors because they are INT32
internally in Parquet.
INT(64, true)
is read as a real vector (REALSXP
).
Unsigned integer types INT(8, false)
, INT(16, false)
and
INT(32, false)
are read as integer vectors (INTSXP
). Large
positive values may overflow into negative values, this is a known
issue that we will fix.
INT(64, false)
is read as a real vector (REALSXP
). Large
positive values may overflow into negative values, this is a known
issue that we will fix.
INTERVAL
is a fixed length byte array, and nanoparquet reads it as
a list of raw vectors. Missing values are denoted by NULL
.
JSON
columns are read as character vectors (STRSXP
).
BSON
columns are read as raw vectors (RAWSXP
).
These types are not yet supported:
Nested types (LIST
, MAP
) are not supported.
The UNKNOWN
logical type is not supported.
You can use the read_parquet_schema()
function to see how R would read
the columns of a Parquet file. Look at the r_type
column.
Apache Arrow (i.e. the arrow R package) adds additional metadata to
Parquet files when writing them in arrow::write_parquet()
. Then,
when reading the file in arrow::read_parquet()
, it uses this metadata
to recreate the same Arrow and R data types as before writing.
nanoparquet::write_parquet()
also adds the Arrow metadata to Parquet
files, unless the nanoparquet.write_arrow_metadata
option is set to
FALSE
.
Similarly, nanoparquet::read_parquet()
uses the Arrow metadata in the
Parquet file (if present), unless the nanoparquet.use_arrow_metadata
option is set to FALSE.
The Arrow metadata is stored in the file level key-value metadata, with
key ARROW:schema
.
Currently nanoparquet uses the Arrow metadata for two things:
It uses it to detect factors. Without the Arrow metadata factors are read as string vectors.
It uses it to detect difftime
objects. Without the arrow metadata
these are read as INT64
columns, containing the time difference in
nanoseconds.
nanoparquet-package for options that modify the type mappings.
Note that this function is now deprecated. Please use
read_parquet_schema()
for files, and infer_parquet_schema()
for
data frames.
parquet_column_types(x, options = parquet_options())
parquet_column_types(x, options = parquet_options())
x |
Path to a Parquet file, or a data frame. |
options |
Nanoparquet options, see |
This function works two ways. It can map the R types of a data frame to
Parquet types, to see how write_parquet()
would write out the data
frame. It can also map the types of a Parquet file to R types, to see
how read_parquet()
would read the file into R.
Data frame with columns:
file_name
: file name.
name
: column name.
type
: (low level) Parquet data type.
r_type
: the R type that corresponds to the Parquet type.
Might be NA
if read_parquet()
cannot read this column. See
nanoparquet-types for the type mapping rules.
repetition_type
: whether the column in REQUIRED
(cannot be
NA
) or OPTIONAL
(may be NA
). REPEATED
columns are not
currently supported by nanoparquet.
logical_type
: Parquet logical type in a list column.
An element has at least an entry called type
, and potentially
additional entries, e.g. bit_width
, is_signed
, etc.
read_parquet_metadata()
to read more metadata,
read_parquet_info()
for a very short summary.
read_parquet_schema()
for the complete Parquet schema.
read_parquet()
, write_parquet()
, nanoparquet-types.
Create a list of nanoparquet options.
parquet_options( class = getOption("nanoparquet.class", "tbl"), compression_level = getOption("nanoparquet.compression_level", NA_integer_), num_rows_per_row_group = getOption("nanoparquet.num_rows_per_row_group", 10000000L), use_arrow_metadata = getOption("nanoparquet.use_arrow_metadata", TRUE), write_arrow_metadata = getOption("nanoparquet.write_arrow_metadata", TRUE), write_data_page_version = getOption("nanoparquet.write_data_page_version", 1L), write_minmax_values = getOption("nanoparquet.write_minmax_values", TRUE) )
parquet_options( class = getOption("nanoparquet.class", "tbl"), compression_level = getOption("nanoparquet.compression_level", NA_integer_), num_rows_per_row_group = getOption("nanoparquet.num_rows_per_row_group", 10000000L), use_arrow_metadata = getOption("nanoparquet.use_arrow_metadata", TRUE), write_arrow_metadata = getOption("nanoparquet.write_arrow_metadata", TRUE), write_data_page_version = getOption("nanoparquet.write_data_page_version", 1L), write_minmax_values = getOption("nanoparquet.write_minmax_values", TRUE) )
class |
The extra class or classes to add to data frames created
in |
compression_level |
The compression level in
|
num_rows_per_row_group |
The number of rows to put into a row group, if row groups are not specified explicitly. It should be an integer scalar. Defaults to 10 million. |
use_arrow_metadata |
If this option is
|
write_arrow_metadata |
Whether to add the Apache Arrow types as
metadata to the file |
write_data_page_version |
Data version to write by default. Possible values are 1 and 2. Default is 1. |
write_minmax_values |
Whether to write minimum and maximum values
per row group, for data types that support this in |
List of nanoparquet options.
# the effect of using Arrow metadata tmp <- tempfile(fileext = ".parquet") d <- data.frame( fct = as.factor("a"), dft = as.difftime(10, units = "secs") ) write_parquet(d, tmp) read_parquet(tmp, options = parquet_options(use_arrow_metadata = TRUE)) read_parquet(tmp, options = parquet_options(use_arrow_metadata = FALSE))
# the effect of using Arrow metadata tmp <- tempfile(fileext = ".parquet") d <- data.frame( fct = as.factor("a"), dft = as.difftime(10, units = "secs") ) write_parquet(d, tmp) read_parquet(tmp, options = parquet_options(use_arrow_metadata = TRUE)) read_parquet(tmp, options = parquet_options(use_arrow_metadata = FALSE))
You can use this schema to specify how to write out a data frame to
a Parquet file with write_parquet()
.
parquet_schema(...)
parquet_schema(...)
... |
Parquet type specifications, see below.
For backwards compatibility, you can supply a file name
here, and then |
A schema is a list of potentially named type specifications. A schema
is stored in a data frame. Each (potentially named) argument of
parquet_schema
may be a character scalar, or a list. Parameterized
types need to be specified as a list. Primitive Parquet types may be
specified as a string or a list.
Data frame with the same columns as read_parquet_schema()
:
file_name
, name
, r_type
, type
, type_length
, repetition_type
, converted_type
, logical_type
, num_children
, scale
, precision
, field_id
.
Special type:
"AUTO"
: this is not a Parquet type, but it tells write_parquet()
to map the R type to Parquet automatically, using the default mapping
rules.
Primitive Parquet types:
"BOOLEAN"
"INT32"
"INT64"
"INT96"
"FLOAT"
"DOUBLE"
"BYTE_ARRAY"
"FIXED_LEN_BYTE_ARRAY"
: fixed-length byte array. It needs a
type_length
parameter, an integer between 0 and 2^31-1.
Parquet logical types:
"STRING"
"ENUM"
"UUID"
"INTEGER"
: signed or unsigned integer. It needs a bit_width
and
an is_signed
parameter. bit_width
must be 8, 16, 32 or 64.
is_signed
must be TRUE
or FALSE
.
"INT"
: same as "INTEGER"
. The Parquet documentation uses "INT"
,
but the actual specification uses "INTEGER"
. Both are supported in
nanoparquet.
"DECIMAL"
: decimal number of specified scale and precision.
It needs the precision
and primitive_type
parameters. Also
supports the scale
parameter, it defaults to zero if not specified.
"FLOAT16"
"DATE"
"TIME"
: needs an is_adjusted_utc
(TRUE
or FALSE
) and a
unit
parameter. unit
must be "MILLIS"
, "MICROS"
or "NANOS"
.
"TIMESTAMP"
: needs an is_adjusted_utc
(TRUE
or FALSE
) and a
unit
parameter. unit
must be "MILLIS"
, "MICROS"
or "NANOS"
.
"JSON"
"BSON"
Logical types MAP
, LIST
and UNKNOWN
are not supported currently.
Converted types are deprecated in the Parquet specification in favor of
logical types, but parquet_schema()
accepts some converted types as a
syntactic shortcut for the corresponding logical types:
INT_8
mean list("INT", bit_width = 8, is_signed = TRUE)
.
INT_16
mean list("INT", bit_width = 16, is_signed = TRUE)
.
INT_32
mean list("INT", bit_width = 32, is_signed = TRUE)
.
INT_64
mean list("INT", bit_width = 64, is_signed = TRUE)
.
TIME_MICROS
means list("TIME", is_adjusted_utc = TRUE, unit = "MICROS")
.
TIME_MILLIS
means list("TIME", is_adjusted_utc = TRUE, unit = "MILLIS")
.
TIMESTAMP_MICROS
means list("TIMESTAMP", is_adjusted_utc = TRUE, unit = "MICROS")
.
TIMESTAMP_MILLIS
means list("TIMESTAMP", is_adjusted_utc = TRUE, unit = "MILLIS")
.
UINT_8
means list("INT", bit_width = 8, is_signed = FALSE)
.
UINT_16
means list("INT", bit_width = 16, is_signed = FALSE)
.
UINT_32
means list("INT", bit_width = 32, is_signed = FALSE)
.
UINT_64
means list("INT", bit_width = 64, is_signed = FALSE)
.
Each type might also have a repetition_type
parameter, with possible
values "REQUIRED"
, "OPTIONAL"
or "REPEATED"
. "REQUIRED"
columns
do not allow missing values. Missing values are allowed in "OPTIONAL"
columns. "REPEATED"
columns are currently not supported in
write_parquet()
.
parquet_schema( c1 = "INT32", c2 = list("INT", bit_width = 64, is_signed = TRUE), c3 = list("STRING", repetition_type = "OPTIONAL") )
parquet_schema( c1 = "INT32", c2 = list("INT", bit_width = 64, is_signed = TRUE), c3 = list("STRING", repetition_type = "OPTIONAL") )
Various Parquet encodings
Currently the defaults are decided based on the R types. This might change in the future. In general, the defaults will likely change until nanoparquet reaches version 1.0.0.
Current encoding defaults:
Definition levels always use RLE
. (Nanoparquet does not currently
write repetition levels, but they'll also use RLE
, once implemented.)
factor
columns use RLE_DICTIONARY
.
logical
columns use RLE
if the average run length of the first
10,000 values is at least 15. Otherwise they use the PLAIN
encoding.
integer
, double
and character
columns use RLE_DICTIONARY
if at
least two third of their values are repeated. Otherwise they use
PLAIN
encoding.
list
columns of raw
vectors always use the PLAIN
encoding
currently.
See https://github.com/apache/parquet-format/blob/master/Encodings.md for more details on Parquet encodings.
PLAIN
encodingSupported types: all.
In general values are written back to back:
Integer types are little endian.
Floating point types follow the IEEE standard.
BYTE_ARRAY
: for each element, there is a little endian 4-byte length
and then the bytes themselves.
FIXED_LEN_BYTE_ARRAY
: bytes are written back to back.
Nanoparquet can read and write this encoding for all primitive types.
RLE_DICTIONARY
encodingSupported types: dictionary indices in data pages.
This encoding combines run-length encoding and bit-packing.
Repeated sequences of the same value can be run-length encoded, and
non-repeated parts are bit packed.
It is used for data pages of dictionaries.
The dictionary pages themselves are PLAIN
encoded.
The deprecated PLAIN_DICTIONARY
name is treated the same as
RLE_DICTIONARY
.
Nanoparquet can read and write this encoding.
RLE
encodingSupported types: BOOLEAN
. Also for definition and repetition levels.
This is the same encoding as RLE_DICTIONARY
, with a slightly different
header. It combines run-length encoding and bit packing.
It is used for BOOLEAN
columns, and also for definition and
repetition levels.
Nanoparquet can read and write this encoding.
BIT_PACKED
encoding (deprecated in favor of RLE
)Supported types: none. Only for definition and repetition levels, but
RLE
should be used instead.
This is a simple bit packing encoding for integers, that was previously
used for encoding definition and repetition levels. It is not used in new
Parquet files because the the RLE
encoding includes it and it is better.
Nanoparquet currently cannot read or write the BIT_PACKED
encoding.
DELTA_BINARY_PACKED
encodingSupported types: INT32
, INT64
.
This encoding efficiently encodes integer columns if the differences between consecutive elements are often the same, and/or the differences between consecutive elements are small. The extreme case of an arithmetic sequence can be encoded in O(1) space.
Nanoparquet can read this encoding, but cannot currently write it.
DELTA_LENGTH_BYTE_ARRAY
encodingSupported types: BYTE_ARRAY
.
This encoding uses DELTA_BINARY_PACKED
to encode the length of all
byte array elements. It is especially efficient for short byte array
elements, i.e. a column of short strings.
Nanoparquet can read this encoding, but cannot currently write it.
DELTA_BYTE_ARRAY
encodingSupported types: BYTE_ARRAY
, FIXED_LEN_BYTE_ARRAY
.
This encoding is efficient if consecutive byte array elements share the same prefix, because each element can reuse a prefix of the previous element.
Nanoparquet can read this encoding, but cannot currently write it.
BYTE_STREAM_SPLIT
encodingSupported types: FLOAT
, DOUBLE
, INT32
, INT64
,
FIXED_LEN_BYTE_ARRAY
.
This encoding stores the first bytes of the elements first, then the second bytes, etc. It does not reduce the size in itself, but may allow more efficient compression.
Nanoparquet can read this encoding, but cannot currently write it.
write_parquet()
on how to select a non-default encoding when
writing Parquet files.
Converts the contents of the named Parquet file to a R data frame.
read_parquet(file, options = parquet_options())
read_parquet(file, options = parquet_options())
file |
Path to a Parquet file. It may also be an R connection,
in which case it first reads all data from the connection, writes
it into a temporary file, then reads the temporary file, and
deletes it. The connection might be open, it which case it must be
a binary connection. If it is not open, then |
options |
Nanoparquet options, see |
A data.frame
with the file's contents.
See write_parquet()
to write Parquet files,
nanoparquet-types for the R <-> Parquet type mapping.
See read_parquet_info()
, for general information,
read_parquet_schema()
for information about the
columns, and read_parquet_metadata()
for the complete metadata.
file_name <- system.file("extdata/userdata1.parquet", package = "nanoparquet") parquet_df <- nanoparquet::read_parquet(file_name) print(str(parquet_df))
file_name <- system.file("extdata/userdata1.parquet", package = "nanoparquet") parquet_df <- nanoparquet::read_parquet(file_name) print(str(parquet_df))
Short summary of a Parquet file
read_parquet_info(file) parquet_info(file)
read_parquet_info(file) parquet_info(file)
file |
Path to a Parquet file. |
Data frame with columns:
file_name
: file name.
num_cols
: number of (leaf) columns.
num_rows
: number of rows.
num_row_groups
: number of row groups.
file_size
: file size in bytes.
parquet_version
: Parquet version.
created_by
: A string scalar, usually the name of the software
that created the file. NA
if not available.
read_parquet_metadata()
to read more metadata,
read_parquet_schema()
for column information.
read_parquet()
, write_parquet()
, nanoparquet-types.
This function should work on all files, even if read_parquet()
is
unable to read them, because of an unsupported schema, encoding,
compression or other reason.
read_parquet_metadata(file, options = parquet_options()) parquet_metadata(file)
read_parquet_metadata(file, options = parquet_options()) parquet_metadata(file)
file |
Path to a Parquet file. |
options |
Options that potentially alter the default Parquet to R
type mappings, see |
A named list with entries:
file_meta_data
: a data frame with file meta data:
file_name
: file name.
version
: Parquet version, an integer.
num_rows
: total number of rows.
key_value_metadata
: list column of a data frames with two
character columns called key
and value
. This is the key-value
metadata of the file. Arrow stores its schema here.
created_by
: A string scalar, usually the name of the software
that created the file.
schema
:
data frame, the schema of the file. It has one row for
each node (inner node or leaf node). For flat files this means one
root node (inner node), always the first one, and then one row for
each "real" column. For nested schemas, the rows are in depth-first
search order. Most important columns are:
file_name
: file name.
name
: column name.
r_type
: the R type that corresponds to the Parquet type.
Might be NA
if read_parquet()
cannot read this column. See
nanoparquet-types for the type mapping rules.
r_type
:
type
: data type. One of the low level data types.
type_length
: length for fixed length byte arrays.
repettion_type
: character, one of REQUIRED
, OPTIONAL
or
REPEATED
.
logical_type
: a list column, the logical types of the columns.
An element has at least an entry called type
, and potentially
additional entries, e.g. bit_width
, is_signed
, etc.
num_children
: number of child nodes. Should be a non-negative
integer for the root node, and NA
for a leaf node.
$row_groups
: a data frame, information about the row groups.
Some important columns:
file_name
: file name.
id
: row group id, integer from zero to number of row groups
minus one.
total_byte_size
: total uncompressed size of all column data.
num_rows
: number of rows.
file_offset
: where the row group starts in the file. This is
optional, so it might be NA
.
total_compressed_size
: total byte size of all compressed
(and potentially encrypted) column data in this row group.
This is optional, so it might be NA
.
ordinal
: ordinal position of the row group in the file, starting
from zero. This is optional, so it might be NA
. If NA
, then
the order of the row groups is as they appear in the metadata.
$column_chunks
: a data frame, information about all column chunks,
across all row groups. Some important columns:
file_name
: file name.
row_group
: which row group this chunk belongs to.
column
: which leaf column this chunks belongs to. The order is
the same as in $schema
, but only leaf columns (i.e. columns with
NA
children) are counted.
file_path
: which file the chunk is stored in. NA
means the
same file.
file_offset
: where the column chunk begins in the file.
type
: low level parquet data type.
encodings
: encodings used to store this chunk. It is a list
column of character vectors of encoding names. Current possible
encodings: "PLAIN", "GROUP_VAR_INT", "PLAIN_DICTIONARY", "RLE", "BIT_PACKED", "DELTA_BINARY_PACKED", "DELTA_LENGTH_BYTE_ARRAY", "DELTA_BYTE_ARRAY", "RLE_DICTIONARY", "BYTE_STREAM_SPLIT".
path_in_scema
: list column of character vectors. It is simply
the path from the root node. It is simply the column name for
flat schemas.
codec
: compression codec used for the column chunk. Possible
values are: "UNCOMPRESSED", "SNAPPY", "GZIP", "LZO", "BROTLI", "LZ4", "ZSTD".
num_values
: number of values in this column chunk.
total_uncompressed_size
: total uncompressed size in bytes.
total_compressed_size
: total compressed size in bytes.
data_page_offset
: absolute position of the first data page of
the column chunk in the file.
index_page_offset
: absolute position of the first index page of
the column chunk in the file, or NA
if there are no index pages.
dictionary_page_offset
: absolute position of the first
dictionary page of the column chunk in the file, or NA
if there
are no dictionary pages.
null_count
: the number of missing values in the column chunk.
It may be NA
.
min_value
: list column of raw vectors, the minimum value of the
column, in binary. If NULL
, then then it is not specified.
This column is experimental.
max_value
: list column of raw vectors, the maximum value of the
column, in binary. If NULL
, then then it is not specified.
This column is experimental.
is_min_value_exact
: whether the minimum value is an actual
value of a column, or a bound. It may be NA
.
is_max_value_exact
: whether the maximum value is an actual
value of a column, or a bound. It may be NA
.
read_parquet_info()
for a much shorter summary.
read_parquet_schema()
for column information.
read_parquet()
to read, write_parquet()
to write Parquet files,
nanoparquet-types for the R <-> Parquet type mappings.
file_name <- system.file("extdata/userdata1.parquet", package = "nanoparquet") nanoparquet::read_parquet_metadata(file_name)
file_name <- system.file("extdata/userdata1.parquet", package = "nanoparquet") nanoparquet::read_parquet_metadata(file_name)
This function should work on all files, even if read_parquet()
is
unable to read them, because of an unsupported schema, encoding,
compression or other reason.
read_parquet_schema(file, options = parquet_options())
read_parquet_schema(file, options = parquet_options())
file |
Path to a Parquet file. |
options |
Return value of |
Data frame, the schema of the file. It has one row for each node (inner node or leaf node). For flat files this means one root node (inner node), always the first one, and then one row for each "real" column. For nested schemas, the rows are in depth-first search order. Most important columns are: - `file_name`: file name. - `name`: column name. - `r_type`: the R type that corresponds to the Parquet type. Might be `NA` if [read_parquet()] cannot read this column. See [nanoparquet-types] for the type mapping rules. - `type`: data type. One of the low level data types. - `type_length`: length for fixed length byte arrays. - `repettion_type`: character, one of `REQUIRED`, `OPTIONAL` or `REPEATED`. - `logical_type`: a list column, the logical types of the columns. An element has at least an entry called `type`, and potentially additional entries, e.g. `bit_width`, `is_signed`, etc. - `num_children`: number of child nodes. Should be a non-negative integer for the root node, and `NA` for a leaf node.
read_parquet_metadata()
to read more metadata,
read_parquet_info()
to show only basic information.
read_parquet()
, write_parquet()
, nanoparquet-types.
Writes the contents of an R data frame into a Parquet file.
write_parquet( x, file, schema = NULL, compression = c("snappy", "gzip", "zstd", "uncompressed"), encoding = NULL, metadata = NULL, row_groups = NULL, options = parquet_options() )
write_parquet( x, file, schema = NULL, compression = c("snappy", "gzip", "zstd", "uncompressed"), encoding = NULL, metadata = NULL, row_groups = NULL, options = parquet_options() )
x |
Data frame to write. |
file |
Path to the output file. If this is the string |
schema |
Parquet schema. Specify a schema to tweak the default
nanoparquet R -> Parquet type mappings. Use |
compression |
Compression algorithm to use. Currently |
encoding |
Encoding to use. Possible values:
If If a specified encoding is invalid for a certain column type,
or nanoparquet does not implement it, This version of nanoparquet supports the following encodings:
See parquet-encodings for more about encodings. |
metadata |
Additional key-value metadata to add to the file.
This must be a named character vector, or a data frame with columns
character columns called |
row_groups |
Row groups of the Parquet file. If |
options |
Nanoparquet options, see |
write_parquet()
converts string columns to UTF-8 encoding by calling
base::enc2utf8()
. It does the same for factor levels.
NULL
, unless file
is ":raw:"
, in which case the Parquet
file is returned as a raw vector.
read_parquet_metadata()
, read_parquet()
.
# add row names as a column, because `write_parquet()` ignores them. mtcars2 <- cbind(name = rownames(mtcars), mtcars) write_parquet(mtcars2, "mtcars.parquet")
# add row names as a column, because `write_parquet()` ignores them. mtcars2 <- cbind(name = rownames(mtcars), mtcars) write_parquet(mtcars2, "mtcars.parquet")